Peer Reviewed Abstracts

Browse the peer reviewed abstract titles on the development and performance of service based diagnostics, technology and products.

1. Weiss, J. Wick, L., Yang, Y., Hashsham, S., Whittam, T., J.M. Tiedje, 2004.  . DNA microarrays as parallel microbial detection tools for water biosafety. ASM Biodefense Research Meeting, Baltimore, Maryland, March 7-10, 2004.

2. Denef, V.J., Park, J., Wick, L., Vervaeren, H., Sys, K., Matsumura, Y., Goris, J., Tsoi, T., Verstraete, W., J.M. Tiedje and S. A. Hashsham. 2004. Use of highly flexible, in situ synthesized microarrays for differential gene expression, comparative genomics and environmental microbial detection. Genomes 2004: International Conference on the Analysis of Microbial and Other Genomes, April 14-17, 2004, Cambridge, United Kingdom.

3. Hashsham, S.A. and J.M. Tiedje. 2004. DNA Biochips for Diagnostics, Source Tracking, and Microbial Community Analyses: Issues and Selected Solutions. To be presented at the 10th International Symposium on Microbial Ecology, Microbial Planet: Subsurface to Space, August 22nd -27th, 2004, Cancun, Mexico.

4. Weiss, J., Denef, V., Klappenbach, J., Cole, J., Gulari, E., Rouillard, J.-M., Whittam, T., Rose, J., Hashsham, S., and J.M. Tiedje. 2004. Microarrays for the parallel detection and identification of microbes indicative of fecal matter contamination in water. To be presented at the 10th International Symposium on Microbial Ecology, Microbial Planet: Subsurface to Space, August 22nd -27th, 2004, Cancun, Mexico.

5. Tourlousse, D., Weiss, J., Stedtfeld, R., J.M. Tiedje and S. Hashsham. 2004. Development of a DNA chip targeting virulence genes of human pathogens. To be presented at the 10th International Symposium on Microbial Ecology, Microbial Planet: Subsurface to Space, August 22nd -27th, 2004, Cancun, Mexico.

6. Stedtfeld, R.D., Weiss, J., Tourlousse, D., J.M. Tiedje, and S.A. Hashsham. 2004.. Innovative validation strategy for optimizing DNA biochips: comparison of synthetic targets and real DNA fragments. To be presented at the 10th International Symposium on Microbial Ecology, Microbial Planet: Subsurface to Space, August 22nd -27th, 2004, Cancun, Mexico.

7. Wick, L.M., Whittam, T.S., Gulari, E., J.M. Tiedje and S.A. Hashsham. 2004. Development of in situ synthesized oligonucleotide microarrays (XeoChips) as parallel detection tools for water biosafety. To be presented at the 10th International Symposium on Microbial Ecology, Microbial Planet: Subsurface to Space, August 22nd -27th, 2004, Cancun, Mexico.

8. S.A. Hashsham, L. M. Wick, R. Stedtfeld, D. Tourlousse, S. Baushke, J-M. Rouillard, J. Klappenbach, J. R. Cole1, E. Gulari, J. M. Tiedje. DNA Biochips for Diagnostics, Source Tracking, and Microbial Community Analysis: Challenges and Selected Solutions, 105th ASM General Meeting, Atlanta, Georgia, May 2005.

9. S. Baushke, S. Kravchenko, L. Wick, R. Stedtfeld, D. Tourlousse, A. Herzog, T. Huynh, J-M. Rouillard, E. Gulari, J.M. Tiedje, and S.A. Hashsham. Statistical Analysis of DNA Microarray Data for Parallel Microbial Detection and Mixed Community Fingerprinting, 105th ASM General Meeting, Atlanta, Georgia, May 2005.

10. Herzog, A, R. Stedtfeld, T. Huynh, S. Baushke, J. Weiss, J-M. Rouillard, E. Gulari, J. Tiedje, and S.A. Hashsham. Challenges in Developing Community Fingerprinting Oligonucleotide Microarrays using the 16S rRNA Gene, 105th ASM General Meeting, Atlanta, Georgia, May 2005.

11. Elizabeth Kruszewski, Y. Matsumura, V. Denef, L. Wick, K. Yadav, R. Xu, S. Baushke, R. Stedtfeld, . J. Tiedje and S. Hashsham. Detection of Vancomycin Resistant Enterococcus faecalis (N00-410) and Enterococcus faecium (N97-330) Using Microarrays, 105th ASM General Meeting, Atlanta, Georgia, May 2005.

12. D. Stedtfeld, L. M. Wick, S. W. Baushke, J.M. Rouillard, X. Yongmei, J. Cole, J. Klappenbach, E. Gulari, J. M. Tiedje, S. A. Hashsham. Validation Strategy for a DNA Biochip: Comparison of Synthetic Targets and Extracted DNA Fragments for 16S rDNA Probes, 105th ASM General Meeting, Atlanta, Georgia, May 2005.

13. Ruifang Xu, R. Stedtfeld, J-M. Rouillard, E. Gulari, J. Tiedje, and S.A. Hashsham. Evaluation of Labeling Protocols for Enhanced Sensitivity of In Situ Synthesized Biochips, 105th ASM General Meeting, Atlanta, Georgia, May 2005.

14. Tourlousse, D., Herzog, A., Baushke, S., Tiedje, J.M., Hashsham, S.A. Development and validation of a DNA chip for the detection of virulence genes of human pathogens. 105th ASM General Meeting, Atlanta, Georgia, May 2005.

15. Syed Hashsham, Dieter Tourlousse, Robert Stedtfeld, Sam Baushke, Jean-Marie Rouillard, Lukas Wick, Erdogan Gulari, and James Tiedje. developing Low Cost and High Density Biochips for Detection and Quantification of Waterborne Pathogens. BAGECO 8, Leon, France, June 26-29, 2005.

16. Robert Stedtfeld, Sam Baushke, Ruifang Xu, Tam  N. T. Huynh, Amanda Herzog, Jean-Marie Rouillard, Erdogan Gulari, James Tiedje, Syed Hashsham. The potential of 16S rDNA oligonucleotide microarray as a microbial community analysis tool . BAGECO 8, Leon, France, June 26-29, 2005.

17. Lukas M. Wick, Thomas S. Whittam, Erdogan Gulari, James M. Tiedje, and Syed A. Hashsham. On-chip non-equilibrium dissociation curve and dissociation rate constant as methods to assess specificity of oligonucleotide probes. BAGECO 8, Leon, France, June 26-29, 2005.

18. R. D. Stedtfeld, S. W. Baushke, S. Miller, J. M. Tiedje, S. A. Hashsham. Microchamber Biochip for Quantitative Detection of Human Pathogens in Environmental Samples. 106th ASM General Meeting, May 20-15, 2006, Orlando, Florida.

19. Dieter M Tourlousse, Sarah M Miller, Robert D Stedtfeld, Amanda B Herzog, Samuel W Baushke, Lukas M Wick, Jean Marie Rouillard, Erdogan Gulari, James M Tiedje, and Syed A Hashsham. Validation of an in situ synthesized oligonucleotide biochip for parallel detection of 12 waterborne pathogens. 106th ASM General Meeting, May 20-15, 2006, Orlando, Florida.

20. Ruifang Xu, Robert D. Stedtfeld, Erdogan Gulari, James M. Tiedje, and Syed A. Hashsham. Influence of Target Preparation on Microarray Based Community Analysis of Indicator Organisms. 106th ASM General Meeting, May 20-15, 2006, Orlando, Florida.

21. Sarah M. Miller, Alok Dhawan, Robert D. Stedtfeld, Dieter M. Tourlousse, James M. Tiedje, and Syed A. Hashsham. Real-Time Hybridization Behavior in a Flow-Through DNA Biochip as a Function of Temperature, Flow Rate, and Time. 106th ASM General Meeting, May 20-15, 2006, Orlando, Florida.

22. Vidya Srinivasan, Alok Dhawan, Robert D Stedtfeld, Sarah M Miller, Trinh Pham, Jean Marie Rouillard, James M Tiedje, Erdogan Gulari, and Syed A Hashsham. Detection of Pathogens in Environmental Samples with Gold Nanoparticles and Silver Enhancement on Microarray Using a Flatbed Scanner. 106th ASM General Meeting, May 20-15, 2006, Orlando, Florida.

23. Xin Yu, Robert D. Stedtfeld, Rebecca Ives, Joan B. Rose, and Syed A. Hashsham Detection and Genotyping of Cryptosporidium parvum and Giardia lamblia with an Oligonucleotide Microarray. 106th ASM General Meeting, May 20-15, 2006, Orlando, Florida.

24. Yu Yang, Robert D. Stedtfeld, Jean-Marie Rouillard, Erdogan Gulari, James M. Tiedje, Syed A. Hashsham. Synthetic virulence and marker gene targets as surrogates for validation of pathogen biochips. 106th ASM General Meeting, May 20-15, 2006, Orlando, Florida.

25. Ahsan Munir, Sarah M Miller, Alok Dhawan, Robert D Stedtfeld, Jean Marie Rouillard, Erdogan Gulari, James M Tiedje, and Syed A Hashsham. Hybridization Behavior of Vancomycin Resistance Genes in a Flow-Through DNA Biochip using a Computational Approach. 106th ASM General Meeting, May 20-15, 2006, Orlando, Florida.

26. Sam Baushke, Robert Stedtfeld, Dieter Tourlouse, Sarah Miller, Erdogan Gulari, James M. Tiedje, and Syed A. Hashsham. Design and Evaluation of a High Throughput On-Chip PCR System for Parallel Detection of Pathogens. 106th ASM General Meeting, May 20-15, 2006, Orlando, Florida.
   

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